{
  "_id": "6a1eac13b25058d4daad9da1",
  "Package": "MSbox",
  "Type": "Package",
  "Title": "Mass Spectrometry Tools",
  "Version": "1.4.8",
  "Author": "Yonghui Dong",
  "Maintainer": "Yonghui Dong <yonghui.dong@gmail.com>",
  "Description": "Common mass spectrometry tools described in John Roboz\n(2013) <doi:10.1201/b15436>. It allows checking element\nisotopes, calculating (isotope labelled) exact monoisitopic\nmass, m/z values and mass accuracy, and inspecting possible\ncontaminant mass peaks, examining possible adducts in\nelectrospray ionization (ESI) and matrix-assisted laser\ndesorption ionization (MALDI) ion sources.",
  "License": "GPL-2",
  "URL": "https://github.com/YonghuiDong/MSbox",
  "BugReports": "https://github.com/YonghuiDong/MSbox/issues/new",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.2",
  "Config/pak/sysreqs": "libicu-dev libxml2-dev",
  "Repository": "https://yonghuidong.r-universe.dev",
  "Date/Publication": "2022-12-08 14:29:35 UTC",
  "RemoteUrl": "https://github.com/yonghuidong/msbox",
  "RemoteRef": "HEAD",
  "RemoteSha": "615167210787ad6baa5494fa5ba03b1398547a82",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 10:06:19 UTC",
    "User": "root"
  },
  "MD5sum": "0cf47e91f00c8bb17723257af8860d04",
  "_user": "yonghuidong",
  "_type": "src",
  "_file": "MSbox_1.4.8.tar.gz",
  "_fileid": "97695601c9be0c162645bbd6840e83d045e858701a1a98896ae4588d4c1657d4",
  "_filesize": 2895331,
  "_sha256": "97695601c9be0c162645bbd6840e83d045e858701a1a98896ae4588d4c1657d4",
  "_created": "2026-06-02T10:06:19.000Z",
  "_published": "2026-06-02T10:10:26.983Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79047243903,
      "time": 175,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7354852366"
    },
    {
      "job": 79047244021,
      "time": 168,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354850398"
    },
    {
      "job": 79047243968,
      "time": 114,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7354831036"
    },
    {
      "job": 79047244054,
      "time": 152,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354844228"
    },
    {
      "job": 79046749623,
      "time": 173,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354792458"
    },
    {
      "job": 79047244005,
      "time": 127,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354836275"
    },
    {
      "job": 79047243975,
      "time": 159,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7354847151"
    },
    {
      "job": 79047244085,
      "time": 122,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7354833994"
    },
    {
      "job": 79047244124,
      "time": 129,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354837035"
    }
  ],
  "_buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/yonghuidong/msbox",
  "_commit": {
    "id": "615167210787ad6baa5494fa5ba03b1398547a82",
    "author": "Dong <yonghui.dong@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1670509775
  },
  "_maintainer": {
    "name": "Yonghui Dong",
    "email": "yonghui.dong@gmail.com",
    "login": "yonghuidong",
    "twitter": "@yonghui_dong",
    "description": "",
    "uuid": 22663189
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "crayon",
      "role": "Imports"
    },
    {
      "package": "xml2",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    }
  ],
  "_owner": "yonghuidong",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "chemoinformatics",
    "mass-spectrometry",
    "metabolites",
    "metabolomics"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "yonghuidong",
      "count": 108,
      "uuid": 22663189
    }
  ],
  "_userbio": {
    "uuid": 22663189,
    "type": "user",
    "name": "Dong"
  },
  "_downloads": {
    "count": 230,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MSbox"
  },
  "_devurl": "https://github.com/yonghuidong/msbox",
  "_searchresults": 11,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MSbox.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/yonghuidong/msbox",
  "_realowner": "yonghuidong",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2017-08-28"
    },
    {
      "version": "1.0",
      "date": "2017-09-27"
    },
    {
      "version": "1.1",
      "date": "2018-03-16"
    },
    {
      "version": "1.1.1",
      "date": "2018-07-22"
    },
    {
      "version": "1.2.0",
      "date": "2019-02-24"
    },
    {
      "version": "1.2.1",
      "date": "2019-07-18"
    },
    {
      "version": "1.2.2",
      "date": "2020-08-10"
    },
    {
      "version": "1.3.8",
      "date": "2021-02-10"
    },
    {
      "version": "1.3.9",
      "date": "2021-04-09"
    },
    {
      "version": "1.4.0",
      "date": "2021-05-25"
    },
    {
      "version": "1.4.4",
      "date": "2022-02-07"
    },
    {
      "version": "1.4.6",
      "date": "2022-02-24"
    },
    {
      "version": "1.4.8",
      "date": "2022-12-08"
    }
  ],
  "_exports": [
    "adduct",
    "contam",
    "describe",
    "doStat",
    "E_iso",
    "getCV",
    "getFC",
    "getMax",
    "getP",
    "Iso_mass",
    "Iso_mz",
    "mass",
    "mz",
    "ppm",
    "searchDB",
    "what"
  ],
  "_help": [
    {
      "page": "adduct",
      "title": "Common adducts",
      "topics": [
        "adduct"
      ]
    },
    {
      "page": "contam",
      "title": "Contaminants in MS",
      "topics": [
        "contam"
      ]
    },
    {
      "page": "describe",
      "title": "Get the compound information",
      "topics": [
        "describe"
      ]
    },
    {
      "page": "doStat",
      "title": "Performing statistics",
      "topics": [
        "doStat"
      ]
    },
    {
      "page": "E_iso",
      "title": "Element isotopes",
      "topics": [
        "E_iso"
      ]
    },
    {
      "page": "getCV",
      "title": "Calculate coefficient of variation (CV)",
      "topics": [
        "getCV"
      ]
    },
    {
      "page": "getFC",
      "title": "calculate fold change",
      "topics": [
        "getFC"
      ]
    },
    {
      "page": "getMax",
      "title": "Get the sample name which has the max ion intensity",
      "topics": [
        "getMax"
      ]
    },
    {
      "page": "getP",
      "title": "get p-values",
      "topics": [
        "getP"
      ]
    },
    {
      "page": "Iso_mass",
      "title": "Isotope labelled molecular mass",
      "topics": [
        "Iso_mass"
      ]
    },
    {
      "page": "Iso_mz",
      "title": "Isotope labelled molecular mass",
      "topics": [
        "Iso_mz"
      ]
    },
    {
      "page": "mass",
      "title": "molecular mass",
      "topics": [
        "mass"
      ]
    },
    {
      "page": "mz",
      "title": "Calculate accurate mass-to-charge ratio",
      "topics": [
        "mz"
      ]
    },
    {
      "page": "ppm",
      "title": "mass accuracy",
      "topics": [
        "ppm"
      ]
    },
    {
      "page": "searchDB",
      "title": "Search in customized database",
      "topics": [
        "searchDB"
      ]
    },
    {
      "page": "what",
      "title": "search for m/z in from the idiom metabolomics database",
      "topics": [
        "what"
      ]
    }
  ],
  "_readme": "https://github.com/yonghuidong/msbox/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "crayon",
    "glue",
    "lifecycle",
    "magrittr",
    "rlang",
    "stringi",
    "stringr",
    "vctrs",
    "xml2"
  ],
  "_score": 2.740362689494244,
  "_indexed": true,
  "_nocasepkg": "msbox",
  "_universes": [
    "yonghuidong"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.4.8",
      "date": "2026-06-02T10:08:48.000Z",
      "distro": "noble",
      "commit": "615167210787ad6baa5494fa5ba03b1398547a82",
      "fileid": "78c22e52b5011447715c4144ef5a953001e4930ed766f9d65e50444d4200256d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.4.8",
      "date": "2026-06-02T10:08:48.000Z",
      "distro": "noble",
      "commit": "615167210787ad6baa5494fa5ba03b1398547a82",
      "fileid": "9aa8740f88d182ff7e1851fae8dceb3dc7db28b39ef96f470d3441882f20f581",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.4.8",
      "date": "2026-06-02T10:08:12.000Z",
      "commit": "615167210787ad6baa5494fa5ba03b1398547a82",
      "fileid": "98c388faa063f6b07f017422cfa69be97bf024382d04593fcd6c4eeb1b70ab79",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.4.8",
      "date": "2026-06-02T10:08:32.000Z",
      "commit": "615167210787ad6baa5494fa5ba03b1398547a82",
      "fileid": "0ec59cf62755dff900d41a6e7b020259f42d8a8ce4eec01e38a3ff8063d0f7d9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.4.8",
      "date": "2026-06-02T10:08:48.000Z",
      "commit": "615167210787ad6baa5494fa5ba03b1398547a82",
      "fileid": "a90869d6c0f979522f9f06d0b2693e201e3a3e26bb021512f50671054a49a319",
      "status": "success",
      "buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.4.8",
      "date": "2026-06-02T10:08:24.000Z",
      "commit": "615167210787ad6baa5494fa5ba03b1398547a82",
      "fileid": "536c9b0b56d930b9aee0a6e2cd1341ab8dfb37664067ea8386b010ce862bb5a6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.4.8",
      "date": "2026-06-02T10:08:01.000Z",
      "commit": "615167210787ad6baa5494fa5ba03b1398547a82",
      "fileid": "e342e0d442c66cbfc5abbb261453b642abcb2ddc75ca5e58b823461759d1c2ff",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.4.8",
      "date": "2026-06-02T10:08:05.000Z",
      "commit": "615167210787ad6baa5494fa5ba03b1398547a82",
      "fileid": "1360ff2117b128714d6406133c89b67a78165b596d2add56e471986f2e3804d3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yonghuidong/actions/runs/26812746151"
    }
  ]
}